|
52
|
|
-l 200 -c 1000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_external -r 10,20,30,40,50,60,70,80,90,100 -m ideal -t 52 -h 512 -u 8388608 -i 0 |
var percentage |
8 months ago
|
|
|
|
51
|
|
-l 200 -c 1000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_external -r 10,20,30,40,50,60,70,80,90,100 -m ideal -t 51 -h 512 -u 8388608 -i 0 |
var percentage |
8 months ago
|
|
|
|
50
|
|
-l 200 -c 1000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_external -r 10,20,30,40,50,60,70,80,90,100 -m ideal -t 50 -h 512 -u 8388608 -i 0 |
var percentage |
8 months ago
|
|
|
|
49
|
|
-l 200 -c 10,50,100,500,1000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 100 -m ideal -t 49 -h 512 -u 8388608 -i 0 |
8 compl |
8 months ago
|
|
|
|
48
|
|
-l 10,20,30,40,50,100,200,300,500,750,1000,2000 -c 100 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 100 -m ideal -t 48 -h 512 -u 8388608 -i 0 |
7 seq length |
8 months ago
|
|
|
|
47
|
|
-l 200 -c 10,50,100,500,1000,5000,10000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 100 -m ideal -t 47 -h 512 -u 8388608 -i 0 |
6 seq count |
8 months ago
|
|
|
|
46
|
|
-l 100,200,500,1000,2000 -c 100 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 100 -m ideal -t 46 -h 512 -u 8388608 -i 0 |
4 threads per block |
8 months ago
|
|
|
|
45
|
|
-l 200 -c 500 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 100 -m ideal -t 45 -h 512 -u 8388608 -i 0 |
3 motif_chunk_size |
8 months ago
|
|
|
|
44
|
|
-l 200 -c 100,500,1000,2000,5000,7000,10000 -g 1,2,3,4 -p 5 -s 0 -o 0 -a gpu_naive_external,gpu_naive_full -r 100 -m ideal -t 44 -h 512 -u 8388608 -i 0 |
5 multiple gpus |
8 months ago
|
|
|
|
43
|
|
-l 200 -c 100,500,1000,2000,5000,7000,10000 -g 1,2,3,4 -p 5 -s 0 -o 0 -a gpu_naive_external,gpu_naive_full -r 100 -m ideal -t 43 -h 512 -u 8388608 -i 0 |
[failed] multiple gpus |
8 months ago
|
|
|
|
42
|
|
-l 10,50,100,200,300,500,750,1000 -c 500 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 100 -m ideal -t 42 -h 512 -u 8388608 -i 0 |
var length |
8 months ago
|
|
|
|
41
|
|
-l 200 -c 100,500,1000,2000,5000,7000,10000 -g 1,2,3 -p 5 -s 0 -o 0 -a gpu_naive_external,gpu_naive_full -r 100 -m ideal -t 41 -h 512 -u 8388608 -i 0 |
multiple gpus |
8 months ago
|
|
|
|
40
|
|
-l 200,500,1000,2000 -c 20,50,100 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_external -r 30 -m ideal -t 40 -h 32,64,128,256,512,1024 -u 8388608 -i 0 |
threads per block on various lengths |
8 months ago
|
|
|
|
39
|
|
-l 100 -c 100 -g 1,2,3 -p 5 -s 0 -o 0 -a gpu_naive_full -r 100 -m ideal -t 39 -h 256 -u 8388608 -i 0 |
[failed] multiple gpus |
8 months ago
|
|
|
|
38
|
|
-l 200 -c 10,100,500,1000,10000 -g 1,2,3 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 100 -m ideal -t 38 -h 512 -u 8388608 -i 0 |
[failed] multiple gpus |
8 months ago
|
|
|
|
37
|
|
-l 200 -c 500 -g 1,2,3 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 100 -m ideal -t 37 -h 512 -u 8388608 -i 0 |
[failed] var gpu 2 |
8 months ago
|
|
|
|
36
|
|
-l 200 -c 500 -g 1,2 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 100 -m ideal -t 36 -h 512 -u 8388608 -i 0 |
[failed] var gpu |
8 months ago
|
|
|
|
35
|
|
-l 200 -c 500 -g 1,2,3 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 100 -m ideal -t 35 -h 512 -u 8388608 -i 0 |
[failed] var gpu |
8 months ago
|
|
|
|
34
|
|
-l 200 -c 10,100,500,1000,2000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 100 -m ideal -t 34 -h 512 -u 8388608 -i 0 |
var count |
8 months ago
|
|
|
|
33
|
|
-l 200 -c 500 -g 1,2,3,4 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 30 -m ideal -t 33 -h 512 -u 8388608 -i 0 |
[failed]Var GPU Tesla T4 2560 cores |
8 months ago
|
|
|
|
32
|
|
-l 200 -c 500 -g 1,2,3,4,5,6,7,8 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 30 -m ideal -t 32 -h 256 -u 8388608 -i 0 |
[failed] var gpu p3.16xlarge(teslav100) |
8 months ago
|
|
|
|
31
|
|
-l 200 -c 500 -g 1,2,3 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 30 -m ideal -t 31 -h 256 -u 8388608 -i 0 |
[failed] var gpu p3.8xlarge (Tesla V100) |
8 months ago
|
|
|
|
29
|
|
-l 200 -c 500 -g 1,2,3 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 30 -m ideal -t 29 -h 256 -u 8388608 -i 0 |
[failed] Var gpu |
8 months ago
|
|
|
|
28
|
|
-l 200 -c 500 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 30 -m ideal -t 28 -h 64,128,256,512,1024 -u 8388608 -i 0 |
var threads_per_block |
8 months ago
|
|
|
|
27
|
|
-l 200 -c 500 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 30 -m ideal -t 27 -h 256 -u 65536,262144,1048576,4194304,8388608,16777216,33554432,67108864 -i 0 |
Var chunk_size |
8 months ago
|
|
|
|
26
|
|
-l 10,50,100,200,300,500,750,1000 -c 100 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -r 30 -m ideal -t 26 -h 256 -u 8388608 -i 0 |
var length |
8 months ago
|
|
|
|
25
|
|
-l 128 -c 10,50,100,500,1000,5000,10000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_external -r 30 -m ideal -t 25 -h 256 -u 8388608 -i 0 |
Var Count |
8 months ago
|
|
|
|
24
|
|
-l 200 -c 10,50,100,500,1000 -g 1 -p 5 -s 0 -o 0,1 -a gpu_naive_external -r 30 -m ideal -t 24 -h 256 -u 8388608 -i 0 |
complementary vs non-complementary |
8 months ago
|
|
|
|
23
|
|
-l 200 -c 100,200,300,400,500,600,700,800,900,1000 -g 1 -p 5 -s 0 -o 0,1 -a gpu_naive_full,gpu_naive_external -r 30 -m ideal -t 23 -h 256 -u 8388608 -i 0 |
var count |
8 months ago
|
|
|
|
22
|
|
-l 200 -c 1000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_external -r 30 -m ideal -t 22 -h 256 -u 65536,262144,1048576,4194304,8388608,16777216,33554432,67108864 -i 0 |
chunk-sze 65K - 67M |
8 months ago
|
|
|
|
21
|
|
-l 200 -c 1000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_external -r 30 -m ideal -t 21 -h 256 -u 65536,262144,1048576,4194304,8388608,16777216,33554432,67108864 -i 0 |
[failed] garbage |
8 months ago
|
|
|
|
20
|
|
-l 200 -c 10,100,1000,10000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full -r 30 -m ideal -t 20 -h 256 -u 8388608 -i 0 |
Tesla V100 (5120cores) |
8 months ago
|
|
|
|
19
|
|
-l 200 -c 10,100,1000,10000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full -r 30 -m ideal -t 19 -h 256 -u 8388608 -i 0 |
Tesla T4 (2560 cores) |
8 months ago
|
|
|
|
18
|
|
-l 200 -c 10,100,1000,10000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full -r 30 -m ideal -t 18 -h 256 -u 8388608 -i 0 |
Tesla M60 (2048 cores) |
8 months ago
|
|
|
|
14
|
|
-l 200 -c 100,1000,10000 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_external,gpu_prefix_external -t 14 -h 256 -u 8388608 |
prefix vs external |
8 months ago
|
|
|
|
13
|
|
-l 200 -c 500,1000,10000 -g 1,2,3 -p 5 -s 0 -o 0 -a gpu_naive_external -t 13 -h 256 -u 8388608 |
multiple gpus |
8 months ago
|
|
|
|
12
|
|
-l 200 -c 500 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full -t 12 -h 256 -u 8388608,4194304,1048576,262144,65536 |
chunksize |
8 months ago
|
|
|
|
11
|
|
-l 200 -c 500 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full -t 11 -h 128,256,512,1024 -u 8388608 |
threads per block |
8 months ago
|
|
|
|
10
|
|
-l 10,20,30,40,50,60,70,80,90,100,110,120,130,140,150,160,170,180,190,200 -c 500 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_external -t 10 -h 256 -u 8388608 |
length step 10 |
8 months ago
|
|
|
|
9
|
|
-l 10,100,1000 -c 10,100 -g 1 -p 5 -s 0 -o 0,1 -a gpu_naive_full -t 9 -h 256 -u 8388608 |
|
8 months ago
|
|
|
|
8
|
|
-l 10,100,1000 -c 10,100 -g 1 -p 5 -s 0 -o 0,1 -a gpu_naive_full -t 8 -h 256 -u 8388608 |
|
8 months ago
|
|
|
|
7
|
|
-l 10,100,128,256 -c 100 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -t 7 -h 256 -u 8388608 |
Var lengths = 10 - 256; Count = 10 |
8 months ago
|
|
|
|
6
|
|
-l 10,100,128,256 -c 100 -g 1 -p 5 -s 0 -o 0 -a gpu_naive_full,gpu_naive_external -t 6 -h 256 -u 8388608 |
Var lengths = 10 - 256; Count = 100 |
8 months ago
|
|
|
|
5
|
|
-l 10,100 -c 10,100 -g 1 -p 5 -s 0 -o 0,1 -a gpu_naive_full,gpu_naive_external -t 5 -h 256 -u 8388608 |
|
8 months ago
|
|
|
|
4
|
|
-l 10,100 -c 10,100 -g 1,3 -p 5 -s 0 -o 0,1 -a gpu_naive_full,gpu_naive_external -t 4 -h 256 -u 8388608 |
|
8 months ago
|
|
|
|
3
|
|
-l 10,20 -c 10,20 -g 1,2,3 -p 5 -s 0 -o 0,1 -a gpu_naive_full,gpu_naive_external -t 3 -h 256,512 -u 8388608 |
|
9 months ago
|
|
|
|
2
|
|
-l 10,20 -c 10,20 -g 1,2,3 -p 5 -s 0 -o 0,1 -a gpu_naive_full,gpu_naive_external -t 2 -h 256,512 -u 8388608 |
|
9 months ago
|
|
|
|
1
|
|
-l 10,20 -c 10,20 -g 1,2,3 -p 5 -s 0 -o 0,1 -a gpu_naive_full,gpu_naive_external -t 1 -h 256,512 -u 8388608 |
|
9 months ago
|
|
|