Task Group

Task Group #18 - rand100_1000_10000b8c30_45fd9646

Status	Start	End	Updated	Duration	Desc	Result
finished	6 months ago	6 months ago	6 months ago	3 hours (12627sec)	Open	Open

Parameters

Complementary Minimum score Filter χ2 Maximum number of results Positive sequences Sequences set Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Maximum χ2 value in contrast sequences set Statistic parameters Using of real frequencies Statistical test type(score) Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementary
8		Minimum score value
35		Maximum motif presence by chance
5		Minimum presence of motif in the seq set
pos.fst		Sequences set
0		Using real frequencies
1		using of the Chi2 (0) or Binomial (1) score
0		Number of motifs. (if 0 then search at max 1000000 motifs)
0		Markov level of frequencies, if RealFreqs==1. 0- bernulli/1- dinucleotides/2- trinucleotides
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. 
neg.fst		Contrast sequences set
10		Maximum score value in contrast seq set)
30		Minimum motif chi2 score (initial filtering)