Task

Task #2080 - 10.fst, group: good240_0_99b8c0__81c50758

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	13 minutes (809sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
WMWNCGCK	44.94	21.057	619.951
GCGNWKWV	46.42	29.8653	264.413
MWHCGCKN	45.75	29.8653	244.126
WYCGCKHN	39.59	29.8653	95.1419
AWMWNCGC	17.58	11.1475	80.7892
MWGCGCKN	17.04	11.1475	68.7787
KNWMABCG	35.56	29.8653	34.6124
WRCGCKNS	25.45	21.057	26.0941
CGNWKTVK	34.59	29.8653	24.5854
NCGCTMVN	34.28	29.8653	21.7606
CGCTMVNN	34.27	29.8653	21.6726
KBWMTNCG	33.73	29.8653	17.2052
TAANNCGC	7.67	5.73774	15.4571
HCGCTKNN	33.47	29.8653	15.256
CGNWKADK	33.18	29.8653	13.2374
WYCGCTGN	7.36	5.73774	11.5607
TRHGCGTW	5.76	4.3348	11.4434
KNWCAACG	7.25	5.73774	10.324
GSWGWRWD	32.62	29.8653	9.80633
CGCKTSWB	10.19	8.48244	9.5845
TKGSCKSK	13.05	11.1475	9.49778
GMTWMNAB	32.52	29.8653	9.25867
KCGCGGNM	7.11	5.73774	8.86306
GHTKTYHV	35.49	32.9098	8.54399
KNRCGCGD	18.25	16.2481	8.1822

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]