Task

Task #1673 - 166.fst, group: good240b8c30__def10369

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	5 years ago	5 years ago	5 years ago	an hour (5732sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TAGANTTG	31.1	1.46624	3057.17
AGANTTGN	33.84	5.73774	1592.87
AANTCTAN	33.77	5.73774	1586.41
GANTTGNN	44.4	21.057	593.973
ANTCTANN	44.31	21.057	589.694
DTCTAVBN	42.42	32.9098	87.4947
TCTAVBVN	42.07	32.9098	80.9333
ANTTGBBD	41.22	32.9098	67.5806
CTCTANNN	26.55	21.057	39.2595
ANTTGNAN	26.2	21.057	34.7748
TCTANNTN	26.15	21.057	34.1565
TCTATNVN	20.11	16.2481	23.8117
DTCTATNN	20.05	16.2481	23.7733
ANTTGAKN	14.38	11.1475	23.1593
WTCTAVAY	6.05	4.3348	15.5538
ANTTGBBC	15.05	12.451	14.682
TCTAMAVN	10.66	8.48244	14.2385
KTKGRYDM	32.95	29.8653	11.7536
TTGWDSRY	18.49	16.2481	9.73118

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]