Task

Task #1767 - 35.fst, group: good240b8c30__def10369

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	5 years ago	5 years ago	5 years ago	3 hours (13389sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
MTASNKTR	68.43	21.057	2247.99
AMBSTAKN	62.16	29.8653	966.74
TASNKTRH	59.0	29.8653	790.571
AMASTAKN	25.36	11.1475	342.306
TASNKTRG	21.41	11.1475	189.95
CDSTAKDD	42.95	32.9098	97.1064
AGHKTRHH	42.11	32.9098	81.6179
ACHTTRNN	38.08	29.8653	68.4339
DNMTASGK	37.76	29.8653	63.9302
ADSTAKNM	37.47	29.8653	59.5492
KGTAKHVD	38.81	32.9098	35.4083
AGNKTRNG	26.17	21.057	34.4031
GNMTASHG	20.88	16.2481	33.9572
STATYHMN	35.1	29.8653	29.6337
ASGTTRNH	20.4	16.2481	27.8434
ADSTATNK	20.22	16.2481	25.709
GHVMTASD	37.69	32.9098	24.0582
GTAGBNHH	37.63	32.9098	23.5154
AGHKTRGY	11.33	8.48244	22.6049
WGMTASHG	11.08	8.48244	19.2507
MGTAKHDD	37.11	32.9098	19.0905
ACKGTGNN	13.95	11.1475	18.0357
TAKYAMNB	33.72	29.8653	17.1278
ACNNNCTA	24.34	21.057	15.6171
STATYBKN	33.45	29.8653	15.1115
RDRTAANS	33.4	29.8653	14.7537
ACMGTRMN	13.62	11.1475	14.5563
GCTAKDNV	26.41	23.3573	13.0288
ADGTAGNK	10.5	8.48244	12.5391
CKHTACGK	5.81	4.3348	12.105
TAKTBVTV	20.58	18.0847	10.828
HGTAKGHD	20.45	18.0847	9.94505
DNWYATAG	18.46	16.2481	9.52845
GWGTRTNM	13.03	11.1475	9.3426
WCHWCTAC	5.5	4.3348	8.329
MSTATTCN	7.05	5.73774	8.27624

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]