Task

Task #1754 - 239.fst, group: good240b8c30__def10369

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	3 hours (12513sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TGGAAAGA	60.19	0.368585	11736.0
GGAAAGAN	60.15	1.46624	8137.73
CTTTCCAN	59.98	1.46624	8103.65
TTTCCANN	61.23	5.73774	4801.97
GAAAGANN	61.15	5.73774	4790.68
AAAGANNN	67.05	21.057	2124.33
TTCCANNN	66.96	21.057	2116.4
AAGABBNH	50.36	32.9098	282.837
TCCABDNB	49.44	32.9098	254.825
AAGAANNN	31.82	21.057	138.602
TCCAANNN	31.21	21.057	124.153
AAGABBNG	19.55	12.451	89.6125
TCCABNNA	24.07	16.2481	89.5222
TCCABCNB	18.68	12.451	70.4197
TCTNNTTC	9.55	5.73774	51.0028
TTTNNTTC	8.8	5.73774	34.496
AGABVMBK	38.38	32.9098	30.1082
AGANDTBV	37.42	32.9098	21.6681
CCAVRDWV	37.39	32.9098	20.667
AGAMNMBM	34.0	29.8653	19.3683
CCABYHBS	36.49	32.9098	14.4724
AGAHVGND	36.42	32.9098	13.9962
AGAHNHAH	36.39	32.9098	13.7949
AMHHVTGG	20.89	18.0847	13.1143
TGNNNTTC	23.96	21.057	12.6935
AGAKTRBB	14.73	12.451	11.7996
CCANRCDN	32.92	29.8653	11.5677

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]