Task

Task #1741 - 227.fst, group: good240b8c30__def10369

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	3 hours (11199sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
AGGGATGA	60.18	0.368585	11733.4
CATCCCTN	60.14	1.46624	8135.73
GGGATGAN	60.11	1.46624	8129.71
GGATGANN	61.73	5.73774	4872.91
ATCCCTNN	61.14	5.73774	4789.25
GATGANNN	67.69	21.057	2181.27
TCCCTNNN	66.95	21.057	2115.52
CCCTHBND	50.05	32.9098	273.424
ATGAHHHN	49.46	32.9098	255.123
CCCTGNNN	31.46	21.057	129.984
ATGAGNNN	30.98	21.057	118.9
GNNDAGGG	24.45	16.2481	97.7992
ATGAHGNN	24.38	16.2481	96.2489
ATGAHHGN	18.67	12.451	70.2115
CCCTHAND	18.53	12.451	67.3272
TGAHNHGD	37.52	32.9098	22.5376
CCTHMNMK	34.18	29.8653	20.8888
TGAYBBHM	37.28	32.9098	20.4819
KHVDMAGG	36.92	32.9098	17.599
CCTDGMVK	14.97	12.451	13.9286
TGARHHHS	36.38	32.9098	13.7281
KBSNKAGG	32.37	29.8653	8.4743
TGAYANHN	32.53	29.8653	8.39149
TGAAGDYY	5.5	4.3348	8.329

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]