Task

Task #1744 - 23.fst, group: good240b8c30__def10369

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	3 hours (11512sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
RYRACYNG	68.94	21.057	2294.66
YRACYBGN	61.66	29.8653	937.652
YRACYAGN	24.44	11.1475	303.474
RACYHGBH	50.2	32.9098	277.807
HRTRACYN	46.32	29.8653	261.63
RGTYRYYH	46.32	29.8653	261.335
VRGTYGYN	45.38	29.8653	233.57
RGTYRYRB	44.97	29.8653	221.816
RACYNGNG	32.1	21.057	145.484
RACYNGAH	24.83	16.2481	106.416
GTYAYHDV	43.08	32.9098	99.54
ACYDGVVR	41.89	32.9098	78.3825
GTYRYHCN	38.47	29.8653	74.8159
RGTYRYYG	17.05	11.1475	68.9931
TRGTYGYN	16.9	11.1475	65.8102
GRTRACYN	16.88	11.1475	64.9746
RACYGGSH	13.52	8.48244	63.01
GTYGYVDD	40.86	32.9098	61.5724
ACYHGBVY	40.57	32.9098	57.87
TYRYRACY	16.13	11.1475	50.5774
ACTNGVTN	21.45	16.2481	42.003
ACYYGTNR	14.73	11.1475	27.8118
GTYAYGNN	25.63	21.057	27.4183
GTYGYTDN	19.77	16.2481	20.7559
ACYDGAVY	15.61	12.451	20.5594
AHDRTRAC	15.4	12.451	18.2326
ACYCGVVR	15.12	12.451	15.3591
GACNNGAC	7.66	5.73774	15.3221
ACCNGHTY	10.65	8.48244	14.1288
TTRTBNRR	33.09	29.8653	12.6444
AACNNGAG	7.42	5.73774	12.2679
GTYGYCDC	5.75	4.3348	11.3134
WBRCCBAG	14.44	12.451	9.49304
TSKTCYDG	10.08	8.48244	8.64505
ACYRGTRR	7.06	5.73774	8.3724
GACNNGAG	7.06	5.73774	8.3724

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]