Task

Task #1714 - 202.fst, group: good240b8c30__def10369

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	2 hours (8848sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
GTTGACAC	30.27	0.368585	4716.52
TTGACACN	30.92	1.46624	3030.52
TGTCAACN	30.76	1.46624	3006.9
TGACACNN	33.6	5.73774	1570.74
GTCAACNN	33.35	5.73774	1547.86
GACACNNN	44.24	21.057	586.553
TCAACNNN	43.77	21.057	564.496
ACACDDVN	42.83	32.9098	94.8865
CAACVBNV	42.1	32.9098	81.9331
ACACCNDN	21.68	16.2481	45.4876
CAACTNNN	26.84	21.057	43.1822
ACACDDTN	16.23	12.451	28.2712
ACACKCNN	14.67	11.1475	26.984
CAACVANN	20.22	16.2481	25.709
ANVKGTTG	11.0	8.48244	18.2353
ACGNNGAC	7.51	5.73774	13.3711
CACRKMBN	33.19	29.8653	13.3043
AACKANNV	33.02	29.8653	12.1942
CACVCNRD	26.12	23.3573	11.0625
WHGTGYGY	10.21	8.48244	9.76149
AAGNNGAC	7.17	5.73774	9.47354
TAGNNGAC	7.15	5.73774	9.26743
AGGNNGAC	7.06	5.73774	8.3724
MACCDTNV	25.65	23.3573	8.27822

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]