Task

Task #1740 - 226.fst, group: good240b8c30__def10369

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	3 hours (10993sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
AGGGATGA	30.25	0.368585	4712.38
CATCCCTN	30.78	1.46624	3009.85
GGGATGAN	30.77	1.46624	3008.37
GGATGANN	33.77	5.73774	1586.41
ATCCCTNN	33.69	5.73774	1579.03
GATGANNN	44.76	21.057	611.408
TCCCTNNN	44.52	21.057	599.877
DNVBAGGG	41.95	32.9098	79.3889
ATGAVNDB	41.55	32.9098	72.293
CCCTNNNG	26.06	21.057	33.0578
ATGANNCN	26.01	21.057	32.4553
ATGATNDN	19.98	16.2481	22.999
DNTNAGGG	19.69	16.2481	19.9331
ATGAMNDA	10.97	8.48244	17.8618
DVVAAGGG	11.93	9.49105	15.9239
TGAMNBSY	33.4	29.8653	14.7537
CCTMHYDS	26.14	23.3573	11.1921
TGAKRHDK	26.04	23.3573	10.5533
TGAYCNKG	7.08	5.73774	8.56668

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]