Task

Task #1728 - 215.fst, group: good240b8c30__def10369

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	5 years ago	5 years ago	5 years ago	2 hours (10151sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TTCCGCTG	60.18	0.368585	11733.4
TCCGCTGN	60.08	1.46624	8123.69
AGCGGAAN	60.0	1.46624	8107.66
CCGCTGNN	61.47	5.73774	4835.98
GCGGAANN	61.01	5.73774	4770.91
CGCTGNNN	67.18	21.057	2135.82
CGGAANNN	66.8	21.057	2102.39
GCTGDDBN	49.98	32.9098	271.257
GGAADNVB	49.14	32.9098	245.915
TNNNTTCC	31.73	21.057	136.423
GCTGNCNN	31.57	21.057	132.59
GCTGCDNN	24.3	16.2481	94.4912
GGAACNNB	23.71	16.2481	81.9973
GGAADNTB	18.56	12.451	67.9405
GCTGDDAN	18.39	12.451	64.4992
ATTNNCGC	9.28	5.73774	44.7239
AGCNNCGG	9.21	5.73774	43.157
TTCNNCGG	8.88	5.73774	36.1157
GTTNNCGC	8.68	5.73774	32.1314
TTTNNCGC	8.67	5.73774	31.9379
TCCNNCGG	8.39	5.73774	26.7445
CTGHKDKB	37.63	32.9098	23.5154
CTGSHHMD	37.35	32.9098	21.0704
GAASHDWH	37.28	32.9098	20.4819
GAAWDRNY	33.34	29.8653	14.3308
DNGNWCAG	33.29	29.8653	13.9837
GAAVNCNY	33.16	29.8653	13.1043
CTGWMWHN	33.12	29.8653	12.8403
AANNNCGC	23.96	21.057	12.6935
GAANBRNG	32.95	29.8653	11.7536
TVCMBCAG	7.85	6.4315	8.64102

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]