Task

Task #1820 - 83.fst, group: good240b8c30__def10369

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	4 hours (17077sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
ANACGRGY	62.29	5.73774	4952.89
CYCGTNTN	63.73	11.1475	3416.12
NACGRGYN	68.44	21.057	2248.9
ACGRGYNN	68.05	21.057	2213.56
YCGTDTNN	60.78	29.8653	887.711
CGRGYDBD	49.88	32.9098	267.881
DNHADACG	49.59	32.9098	259.339
YCGTCTNN	23.25	11.1475	256.206
CGRGYNAN	31.86	21.057	139.575
CGTGTNNN	31.19	21.057	123.692
CGRGYCBN	24.68	16.2481	102.585
CGTHTCNN	24.49	16.2481	98.6903
GVHRCYCG	18.79	12.451	72.7285
CGTHTDNG	18.35	12.451	63.7016
GTNTGMNH	35.26	29.8653	31.3198
GTHTBGVN	38.12	32.9098	28.143
GTYTHHHM	37.75	32.9098	24.6077
GRGTBYBH	37.17	32.9098	19.5754
GRGYBAHH	36.84	32.9098	16.9912
GRGYBGHD	36.8	32.9098	16.6917
GTRTYHHH	36.62	32.9098	15.3812
GTNTHWNG	33.47	29.8653	15.256
GRGYBYAN	33.22	29.8653	13.5061
GACNNGCC	7.38	5.73774	11.7939
ACANNCGA	7.32	5.73774	11.102
ATANNCGA	7.22	5.73774	10.0002
GRGYAABN	18.47	16.2481	9.59574
ATANNCGG	7.18	5.73774	9.57757
ACANNCGG	7.17	5.73774	9.47354
AGANNCGG	7.08	5.73774	8.56668

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]