Task

Task #2677 - 106.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	19 hours (68526sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
ACCCMSMM	33.7	5.73774	1579.95
KSKGGGTN	37.38	11.1475	1014.6
SKGGGTNN	43.92	21.057	571.313
CCCMSMMN	43.47	21.057	550.437
KGGGTHNN	45.01	29.8653	222.949
CCMSAMBN	39.31	29.8653	89.9698
GGGTBBNH	41.67	32.9098	74.2442
KGGGTGNH	13.2	8.48244	55.9316
CCMGCMNN	27.18	21.057	48.0179
GGGTNANN	26.37	21.057	36.9189
CCMCCMKN	14.7	11.1475	27.3963
CCMSAMAN	14.29	11.1475	22.0324
GGGTABNN	19.55	16.2481	17.8452
CMGMAMBN	33.61	29.8653	16.2892
CMVACKDV	36.15	32.9098	12.2454
GGTBDMDY	36.06	32.9098	11.6922
KSGGTGHG	5.76	4.3348	11.4434
CCCAANVN	18.62	16.2481	10.6396
GGGTYBMG	5.61	4.3348	9.57916

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]