Task

Task #2729 - 153.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	17 hours (64624sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
GATRARGC	11.4	1.46624	608.345
ATRARGCN	15.14	5.73774	252.493
CYTYATCN	15.1	5.73774	250.626
YTYATCNN	28.66	21.057	71.9974
TRARGCNN	28.39	21.057	66.7875
TYATCNVN	35.16	29.8653	30.2603
RARGCBVD	36.66	32.9098	15.6672
RARGCANB	18.46	16.2481	9.52845
TYATCNTV	10.12	8.48244	8.97999
AACMAVYT	5.59	4.3348	8.72553

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]