Task

Task #2785 - 203.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	16 hours (60213sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
GTTGACAC	60.22	0.368585	11743.8
TTGACACN	60.29	1.46624	8165.84
TGTCAACN	60.17	1.46624	8141.75
TGACACNN	61.83	5.73774	4887.15
GTCAACNN	61.67	5.73774	4864.39
GACACNNN	67.77	21.057	2188.38
TCAACNNN	67.49	21.057	2163.41
ACACBBDN	50.93	32.9098	301.117
DNVDGTTG	49.92	32.9098	269.406
ACACNANN	32.4	21.057	153.031
CAACGNNN	31.77	21.057	137.389
GTGTNGAC	5.15	1.46624	125.774
ACGTNGAC	5.13	1.46624	124.511
ACACNBCN	24.9	16.2481	108.04
CAACHNNG	24.63	16.2481	101.839
ACACABKN	14.24	8.48244	80.3154
DNTDGTTG	18.68	12.451	70.4197
ACGNNGAC	9.56	5.73774	51.2425
GTGNNGAC	8.99	5.73774	38.3989
TAGNNGAC	8.72	5.73774	32.9109
ATGNNGAC	8.69	5.73774	32.3255
GAGNNGAC	8.57	5.73774	30.0331
CACWHVVK	37.91	32.9098	26.1055
CACCVVDN	37.47	32.9098	22.1005
AACCHBND	37.38	32.9098	21.3254
ACACABAN	6.36	4.3348	20.6573
MACGRVVD	36.94	32.9098	17.7529
AACWYHBD	36.83	32.9098	16.916
DDAHNGTG	36.68	32.9098	15.8113
DNKRCGTK	32.86	29.8653	11.2013
TGNNNCCG	23.61	21.057	10.305
AACMGNVN	32.51	29.8653	9.205

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]