Task

Task #2862 - 58.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	15 hours (54415sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TYTANWMS	44.21	21.057	584.955
KWVTARAN	46.19	29.8653	257.36
YTABWCSN	39.04	29.8653	84.6437
WRTARANV	38.32	29.8653	72.3283
TARAMVHH	39.97	32.9098	49.0039
YTANWASB	36.66	29.8653	48.1398
KATTARAN	9.14	5.73774	41.6155
AYTARANN	26.28	21.057	35.1791
TARAHBGN	28.45	23.3573	32.099
MTAAABNN	34.73	29.8653	25.9217
RTAGANNV	34.6	29.8653	24.6796
AHTYTAYW	11.29	8.48244	22.0499
TARAGNDN	34.26	29.8653	21.5847
KTTTAVAK	6.21	4.3348	18.0984
TARAMNHG	19.45	16.2481	17.5704
TAYWMCNV	33.82	29.8653	17.1378
TSTTNTAR	7.69	5.73774	15.729
YTAGAVWN	19.03	16.2481	13.8206
TARTMCNN	24.08	21.057	13.5797
TAYWMGBN	33.21	29.8653	13.4386
TYTARARW	7.45	5.73774	12.63
AGWVSBDT	36.18	32.9098	12.4331
AHACMDKH	36.06	32.9098	11.6922
YTAATCSB	5.73	4.3348	11.056
TARATVHH	20.57	18.0847	10.7585
KTAAABNG	10.24	8.48244	10.0305
TARAMTHM	10.1	8.48244	8.81156

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]