Task

Task #2713 - 139.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	18 hours (65753sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TTYKAGTC	60.3	1.46624	818.161
TYKAGTCN	61.7	5.73774	488.226
ACTMRAAN	60.9	5.73774	476.904
YKAGTCNN	67.2	21.057	215.068
CTMRAANN	66.6	21.057	209.791
KAGTCBNN	61.2	29.8653	92.5217
AGTCBHNV	51.7	32.9098	34.0854
TMRAASNV	48.2	29.8653	33.6258
KAGTCANN	23.3	11.1475	27.1351
TMRAAWND	42.3	29.8653	16.6346
AGTCANNN	31.4	21.057	14.2166
MRAACHSN	39.7	29.8653	11.1012
AGTCBGNN	23.7	16.2481	9.50439

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]