Task

Task #2717 - 142.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	18 hours (65476sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TTYKAGTC	30.95	1.46624	3034.96
TYKAGTCN	33.95	5.73774	1603.05
ACTMRAAN	33.74	5.73774	1583.64
YKAGTCNN	44.86	21.057	616.07
CTMRAANN	44.25	21.057	586.848
KAGTCNNH	45.95	29.8653	250.401
AGTCVBND	42.13	32.9098	81.9612
TMRAADBH	41.47	32.9098	71.5173
KAGTCNNG	17.02	11.1475	68.351
AGTCTNNN	26.78	21.057	42.3553
TMRAACNN	26.54	21.057	39.1276
AGTCVNNC	20.52	16.2481	29.3145
TMRAADAN	20.26	16.2481	26.1758
AGTCVAND	15.66	12.451	21.1349
TMRAADBG	15.38	12.451	18.0187
AAAAYHNN	33.81	29.8653	17.0578
GTCNYHYK	33.2	29.8653	13.3714
AWRYVRAC	18.47	16.2481	9.59574

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]