Task

Task #2690 - 118.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	18 hours (67359sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
GTGANVTG	26.4	4.3348	1235.29
TGANNTGN	44.76	21.057	611.235
ANNTCACN	44.1	21.057	579.763
GTGANTTG	8.5	1.46624	356.276
GADVTGNB	42.73	32.9098	92.5917
DDTCACND	42.07	32.9098	81.4211
BBHGTGAN	41.69	32.9098	75.074
TCACDVVN	41.6	32.9098	73.1029
GACNTGNN	26.95	21.057	44.7188
NCTCACNN	26.71	21.057	41.4007
ANNGTGAN	26.0	21.057	32.3354
TCACNNTN	25.89	21.057	31.0323
TNCANHTC	20.64	16.2481	30.824
CDTCACNN	20.35	16.2481	27.2418
GADTTGNB	15.74	12.451	22.0728
TCACNTVB	15.58	12.451	20.2181
YANGTGAN	14.12	11.1475	19.9823
GNGTGAHH	15.24	12.451	16.5584
ADSTGYBB	36.11	32.9098	11.9977
BBGGTGAN	14.72	12.451	11.7152
TCACCVVN	14.69	12.451	11.4641
AMHTGADN	26.02	23.3573	10.4283
DHNBAGTG	35.79	32.9098	9.21382
AHMTGGMR	10.1	8.48244	8.81156
ANVTGCMA	10.1	8.48244	8.81156

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]