Task

Task #2876 - 70.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	14 hours (53362sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
CGATCNGN	33.78	5.73774	1587.33
CNGATCGN	33.56	5.73774	1567.06
GATCNGNN	43.34	21.057	544.473
DGATCGNN	34.8	16.2481	443.954
GATCGHNN	32.71	16.2481	356.505
ATCGGNNN	30.82	21.057	114.913
ATCHGBNV	41.16	32.9098	66.129
ATCGHVBN	40.87	32.9098	62.2575
CGATCGHV	6.51	3.26897	58.1798
TCGGRVNN	34.66	29.8653	25.2489
ATCHGNNT	20.08	16.2481	24.1092
ATCGHNAN	19.82	16.2481	21.279
TCNNNATC	24.11	21.057	13.8066
ATCHGAVV	11.72	9.49105	13.6771
TCRGYBHV	36.37	32.9098	13.6616
TCHGGBHN	36.09	32.9098	11.8749
ATCGYTBB	8.09	6.4315	11.0549
ADCKATYG	5.68	4.3348	10.4265
CGKKRCRR	13.13	11.1475	10.1338

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]