Task

Task #2850 - 47.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	15 hours (55134sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
RSGAMTSN	68.4	21.057	2245.27
SAKTCSYN	68.05	21.057	2213.56
DNSAKTCS	61.4	29.8653	922.708
AKTCSYNB	60.96	29.8653	897.7
GAMTSBHH	50.25	32.9098	279.375
AKTCSYNA	23.21	11.1475	254.676
CNSAKTCS	23.17	11.1475	252.917
GAMTSNNG	32.29	21.057	150.243
GAMTSANH	24.27	16.2481	93.836
KTCGYHHV	41.66	32.9098	74.5839
GAMTSBGH	18.74	12.451	71.6748
KTCCYBDV	41.04	32.9098	64.8155
AHNRSGAM	36.57	29.8653	46.9476
TCSTKDVB	38.23	32.9098	29.2427
AMTCVHVS	37.82	32.9098	25.2572
KTCCYNCN	25.36	21.057	25.1384
KTCGYNGV	20.1	16.2481	24.3345
TCSYDCWN	34.44	29.8653	23.1955
TCSTMDVV	37.57	32.9098	22.9793
TCSCHRVV	37.31	32.9098	20.733
AMTGVVSH	37.09	32.9098	18.9303
KTCCYADV	15.38	12.451	18.0187
AMTSTBDB	36.73	32.9098	16.1749
AMTSSBTN	33.45	29.8653	15.1115
TCSYNKTD	33.34	29.8653	14.3308
TCSCHYSN	33.3	29.8653	14.0528
GTCGYGHV	8.22	6.4315	12.5034
AMTGRNVG	18.46	16.2481	9.52845
AGNRCGAH	10.13	8.48244	9.06492
ATKKSAKT	7.07	5.73774	8.46921

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]