Task

Task #2705 - 131.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	18 hours (66249sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
ATTACTMR	60.46	1.46624	8200.01
KAGTAATN	60.56	2.91107	6441.67
TTACTMRN	61.76	5.73774	4877.18
AGTAATNN	61.32	5.73774	4814.71
TACTMRNN	67.13	21.057	2131.4
GTAATNNN	66.88	21.057	2109.36
TAATVNVD	50.37	32.9098	283.44
ACTMRVVV	49.76	32.9098	264.205
TAATNNNC	32.01	21.057	143.255
ACTMRNNT	31.55	21.057	132.114
TAATNNTD	24.42	16.2481	97.1334
ACTMRNTV	23.58	16.2481	79.3562
TAATTBVD	14.53	9.49105	58.0497
ACTMRTVV	17.79	12.451	53.0257
AATSNKBY	34.82	29.8653	26.8005
AATVYVDR	37.53	32.9098	22.6255
CTMARDVD	37.31	32.9098	20.733
GVNNYGAG	33.51	29.8653	15.5473
CTMRYMHR	33.28	29.8653	13.9149
AATNRBAN	33.22	29.8653	13.5061
AATNBCBY	26.26	23.3573	11.9882
AATDGNBR	26.14	23.3573	11.1921
AATHYAHY	14.55	12.451	10.3334
AATNNAGT	7.19	5.73774	9.68226
WVVCCKAG	14.45	12.451	9.56769
AATDHTGR	7.87	6.4315	8.82911
AHMATKAG	5.53	4.3348	8.66001

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]