Task

Task #2704 - 130.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	18 hours (66395sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
ATTACTMR	30.93	1.46624	3032.0
KAGTAATN	31.79	2.91107	2256.79
TTACTMRN	33.59	5.73774	1569.82
AGTAATNN	33.53	5.73774	1564.31
GTAATNNN	44.64	21.057	605.456
TACTMRNN	44.11	21.057	580.234
TAATVBBN	41.78	32.9098	76.0553
ACTMRVBV	41.7	32.9098	75.2377
ACTMRNNT	26.11	21.057	33.6659
TAATNNAV	20.85	16.2481	33.5572
TAATTBBN	15.82	12.451	23.0316
ACTMRNAV	19.7	16.2481	20.035
TAATVABN	15.51	12.451	19.4332
CTCRSDDD	36.3	32.9098	13.2011
AATVKSBB	36.29	32.9098	13.1361
ACTMRTSV	10.31	8.48244	10.6748
ATDNATTA	5.65	4.3348	10.0584
CTAABHNB	35.64	32.9098	8.38203

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]