Task

Task #2740 - 163.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	17 hours (63836sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TAGANTTG	61.1	1.46624	834.289
AANTCTAN	62.6	5.73774	501.103
AGANTTGN	62.2	5.73774	495.362
ANTCTANN	69.5	21.057	235.959
GANTTGNN	67.4	21.057	216.843
HTCTANHB	53.7	32.9098	41.2102
TCTAKBNN	49.2	29.8653	36.858
ADTTGNHH	52.0	32.9098	35.1097
TCTAMHNN	45.9	29.8653	26.2772
ACTTGNNN	33.0	21.057	18.2304
ADTTGNGW	15.6	8.48244	13.0606
RTTGHYNM	40.4	29.8653	12.4715
TTGDYSVB	43.6	32.9098	12.3425
GTCTANBN	24.8	16.2481	11.9035
CTATBYTN	13.9	8.48244	8.43544
ARTTGNYG	10.3	5.73774	8.22797
TVNTAGAD	18.6	12.451	8.16668

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]