Task

Task #2849 - 46.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	15 hours (55263sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
RSGAMTSN	44.21	21.057	584.955
SAKTCSYN	43.97	21.057	573.654
DNSAKTCS	45.77	29.8653	244.72
AKTCSYNB	45.17	29.8653	227.197
GAMTSHHH	41.77	32.9098	75.8898
CNSAKTCS	16.9	11.1475	65.3947
AKTCSYNA	16.75	11.1475	62.6969
GAMTSGNN	26.53	21.057	38.9959
KTCSCHVH	37.9	32.9098	26.0105
KTCSTVBV	37.4	32.9098	21.4964
GAMTSHNG	19.83	16.2481	21.3845
TCCYHHVM	36.38	32.9098	13.7281
AMTGKYDN	33.24	29.8653	13.6416
GAMTSHGH	14.87	12.451	13.0175
KTCSCNTN	23.85	21.057	11.9112
AMTSAHMD	26.17	23.3573	11.3881
TCGYBDDR	35.76	32.9098	9.04414
AATCYDYN	18.5	16.2481	8.97236

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]