Task

Task #2889 - 82.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	14 hours (52416sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
ANACGRGY	33.65	5.73774	1575.34
CYCGTNTN	37.3	11.1475	1009.19
NACGRGYN	44.54	21.057	600.659
ACGRGYNN	44.32	21.057	590.168
YCGTNTND	46.01	29.8653	251.905
DHNAVACG	42.74	32.9098	93.2383
DNNGCYCG	38.27	29.8653	72.0114
GNANACGR	16.97	11.1475	67.2869
CGRGTNNV	37.15	29.8653	54.8959
CGTATNNN	26.03	21.057	32.6956
CGTBTNCN	20.02	16.2481	23.4398
GTYTHHYV	37.12	32.9098	19.1708
CGTBTNDG	15.31	12.451	17.2803
GTDTGNHB	36.23	32.9098	12.7499
CGRGCDNG	10.5	8.48244	12.5391
GTBTYVRB	36.18	32.9098	12.4331
ANNACYCG	13.04	11.1475	9.42

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]