Task

Task #2678 - 107.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	18 hours (68380sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
ACCCMSMM	62.2	5.73774	4940.0
KSKGGGTN	64.19	11.1475	3469.04
SKGGGTNN	67.86	21.057	2196.46
CCCMSMMN	67.72	21.057	2183.9
KGGGTNNH	61.26	29.8653	914.849
CCMSAMBN	48.14	29.8653	320.343
GGGTDHNH	49.91	32.9098	269.098
KGGGTNNG	22.6	11.1475	231.835
CCMSCMKN	33.36	21.057	178.377
GGGTNNHG	25.28	16.2481	117.054
GGGTNGNH	23.76	16.2481	83.0239
CCMGCMMN	17.45	11.1475	77.8171
CCMSAMAN	17.43	11.1475	77.3644
GGGTCHNH	17.94	12.451	55.7949
CMCMMKSB	35.13	29.8653	29.9461
WKKGGYGG	8.27	5.73774	24.6535
GGTDKMDB	37.63	32.9098	23.5154
CCSMMKWB	34.34	29.8653	22.2929
CASCMNWB	34.27	29.8653	21.6726
GGTVMHWB	37.37	32.9098	21.2402
GKGTWNGG	7.84	5.73774	17.8454
CASAMBWN	33.44	29.8653	15.0396
GGTNKVCD	26.46	23.3573	13.3869
TNMTGBGG	10.46	8.48244	12.1327
CCCAVMKB	14.61	12.451	10.8096
SKTGGTGV	5.71	4.3348	10.8018
CASCMMSK	13.13	11.1475	10.1338

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]