Task

Task #2756 - 178.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	17 hours (62508sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
AAATTNAA	31.15	1.46624	3064.58
TNAATTTN	33.65	5.73774	1575.34
AATTNAAN	33.52	5.73774	1563.45
NAATTTNN	42.52	21.057	507.736
ATTNAANN	41.05	21.057	444.33
AATTTNNN	40.73	21.057	431.082
ATTTVBBN	41.94	32.9098	79.2207
TTRAANVN	38.47	29.8653	75.3112
AANNNAAT	28.25	21.057	64.8822
TTYAANVN	37.66	29.8653	62.402
TTKAANTV	11.31	8.48244	22.3265
ATTTTNSN	14.17	11.1475	20.5746
TTTRBKNM	33.82	29.8653	17.9105
ATTTVBAN	14.97	12.451	13.9286
TTMAAVTV	8.33	6.4315	13.8051
TMAAHNSY	33.23	29.8653	13.5737
ATTTSABV	8.3	6.4315	13.4432
TDAAGBRV	20.86	18.0847	12.8819
TTTTVBNB	36.06	32.9098	11.6922
AACDYNAA	10.18	8.48244	9.49672

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]