Task

Task #2771 - 191.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	17 hours (61246sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
CAGAAGAG	60.14	0.368585	11723.0
TCTTCTGN	60.08	1.46624	8123.69
AGAAGAGN	60.0	1.46624	8107.66
CTTCTGNN	61.46	5.73774	4834.56
GAAGAGNN	61.2	5.73774	4797.73
TTCTGNNN	67.3	21.057	2146.45
AAGAGNNN	67.17	21.057	2134.93
AGAGVHNV	50.56	32.9098	289.47
TCTGDNDV	49.78	32.9098	265.112
AGAGTNNN	32.9	21.057	166.006
TCTGNNCN	31.39	21.057	128.338
AGAGVNNT	24.4	16.2481	96.6907
AHNNCAGA	24.27	16.2481	93.836
TCTGCNDV	18.5	12.451	66.7164
AGAGVGNV	17.86	12.451	54.3097
GAGTDVHN	38.01	32.9098	27.0656
GAGVMMVB	37.56	32.9098	22.1607
CTGRHDVS	37.39	32.9098	21.4108
GAGVDKBM	37.37	32.9098	21.2402
WHBHMCAG	36.76	32.9098	16.3953
GAGVKMMH	26.37	23.3573	12.7464
CTGCNHHV	35.92	32.9098	10.8621
GAGNCTDH	14.51	12.451	10.0229

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]