Task

Task #2730 - 154.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	17 hours (64525sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
GATRARGC	31.2	1.46624	3072.0
ATRARGCN	34.28	5.73774	1633.74
CYTYATCN	33.85	5.73774	1593.8
TRARGCNN	44.72	21.057	609.306
YTYATCNN	44.19	21.057	584.009
TYATCNND	45.56	29.8653	238.515
RARGCVVV	42.06	32.9098	81.2508
TYATCNNC	16.74	11.1475	62.4918
ANNGCYTY	25.95	21.057	31.7397
ARGCYVHD	37.99	32.9098	26.8721
CATCBKNN	34.67	29.8653	25.3444
AAGCRBNN	34.4	29.8653	22.8322
TATCNHBD	37.45	32.9098	21.927
RARGCNTR	14.01	11.1475	18.7108
RARGCTVV	15.29	12.451	17.0724
AGSCRTDB	14.63	12.451	10.9712
CATCHMNB	26.08	23.3573	10.8061
AGGCVVGV	11.21	9.49105	8.99708

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]