Task

Task #2863 - 59.fst, group: 240b8c30_3b959b6d

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	15 hours (54258sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TYTANWMS	68.25	21.057	2231.65
KWNTARAD	62.37	29.8653	979.095
YTAVAMSN	47.88	29.8653	311.332
ANTARANB	45.62	29.8653	240.28
TARAMSND	43.66	29.8653	185.892
YTANTMSB	43.55	29.8653	183.388
GTYTABWM	17.54	8.48244	181.911
TRTARANN	31.92	21.057	140.677
TARANBNC	38.59	29.8653	77.3263
RTARAVBB	41.82	32.9098	77.2164
ANTARANA	17.12	11.1475	70.5021
TARAKHVD	41.07	32.9098	65.2724
TANTCSNV	37.67	29.8653	62.5539
TARAMWND	37.28	29.8653	56.7634
VTARANAN	37.19	29.8653	55.4671
YTATAMSN	16.35	11.1475	54.7386
YTARAKBN	36.56	29.8653	46.8161
TSGANTAR	8.94	5.73774	37.3531
TAYAMSNH	35.78	29.8653	37.1355
TYTARAKB	11.71	8.48244	28.2188
TARAKGND	20.23	16.2481	25.8253
TVNTYTAY	20.1	16.2481	24.3345
TAKTASBB	15.92	12.451	24.2594
ARACSHKN	34.46	29.8653	23.3783
TYTARAMW	8.12	5.73774	22.1558
ARAASBDD	37.45	32.9098	21.927
TAMTASBN	19.77	16.2481	20.7559
GTYTRATV	6.12	4.3348	16.6433
RTARATBB	15.22	12.451	16.3551
YTARAMTN	13.76	11.1475	15.9838
ARASBDAH	36.76	32.9098	15.5946
ANSGANTA	13.6	11.1475	14.3582
TARAGYTD	5.97	4.3348	14.3545
ARADYABB	36.41	32.9098	13.9289
TTAGANAN	7.54	5.73774	13.7502
TARANANC	13.53	11.1475	13.6767
TAYAMSNG	13.42	11.1475	12.6426
AAHCABBN	36.16	32.9098	12.3078
ANWCGCMN	23.67	21.057	10.6936
TGTANTAD	5.57	4.3348	9.11299
AGTVGTHY	7.83	6.4315	8.45533

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]