Task

Task #2441 - 11.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	9 minutes (578sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
WMWNCGCK	68.27	21.057	2233.46
GCGNWKWH	62.0	29.8653	957.382
MWNCGCKV	61.89	29.8653	950.976
WWCGCKBN	48.85	29.8653	344.811
AMGCGNWK	24.29	11.1475	297.115
GCGNWKWG	23.88	11.1475	280.808
CGCTDWNN	41.66	29.8653	137.38
WSCGCKNS	31.11	21.057	121.856
CGDWTWDB	42.63	32.9098	90.7756
TAANNCGC	10.31	5.73774	70.6151
DNWCTNCG	38.03	29.8653	68.1488
BCGCTMNN	37.61	29.8653	61.6447
CGCKDSHD	40.07	32.9098	50.918
WCCGCKSW	9.45	5.73774	48.6341
DCGCKKSN	36.61	29.8653	47.4756
WTAGCGNW	9.08	5.73774	40.3147
CGDTGWNN	35.87	29.8653	38.194
WWCGCKAS	8.84	5.73774	35.3016
DNNGAGCG	20.93	16.2481	34.629
TNWAWHCG	20.47	16.2481	28.6969
KNKCGCGK	14.74	11.1475	27.951
HCGCTKWN	20.16	16.2481	25.0169
GNHHCGCG	15.95	12.451	24.6341
CGCGHWMD	15.45	12.451	18.7734
CGCKDSGD	15.22	12.451	16.3551
CGHAGWBG	8.52	6.4315	16.2149
CGRWTWCB	10.83	8.48244	16.1719
CGCATWNB	10.78	8.48244	15.5897
GMTKTHDB	36.62	32.9098	15.3812
GWMCGCGN	7.59	5.73774	14.3943
ACGCTMNN	13.57	11.1475	14.0639
CGCGCCVN	5.91	4.3348	13.4875
WGDWAWNC	33.16	29.8653	13.1043
GHWKWGRM	32.89	29.8653	11.3836
MSTCGCGN	7.29	5.73774	10.7647
GNSHAGCG	10.3	8.48244	10.5814
GCGYGMHM	10.29	8.48244	10.4884
GBDKAAWV	35.79	32.9098	10.1244
AGVGSGCW	5.62	4.3348	9.69776
CGCGNWKG	7.19	5.73774	9.68226
CCGCKTSV	5.61	4.3348	9.57916
TWMCGCGD	5.49	4.3348	8.22033

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]