Task

Task #2563 - 22.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	5 minutes (304sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
RYRACYNG	45.08	21.057	626.77
YRACYHGN	46.74	29.8653	274.379
RACYHGDV	42.41	32.9098	86.8427
RGTYRYYH	38.95	29.8653	83.0525
RRYRACYH	38.68	29.8653	78.3677
YRACYGGN	17.34	11.1475	75.3421
YRYRACYD	37.44	29.8653	59.1049
RGTYRYRD	36.97	29.8653	52.362
RACYNGCN	26.78	21.057	42.3553
GTYRYYYB	35.28	29.8653	31.534
ACYDGMBH	38.3	32.9098	29.954
RRYRACYG	14.66	11.1475	26.8472
AHCRRGTY	11.43	8.48244	24.0225
TNVRYRAC	34.3	29.8653	21.9373
GTYRYRDK	34.09	29.8653	20.1208
RACYGGDD	15.56	12.451	19.3551
RGTYRYYG	13.98	11.1475	18.3716
ACYBGNAN	33.59	29.8653	16.1393
GYRYRACY	13.61	11.1475	14.4571
GRGTYRYR	13.62	11.1475	13.8731
ACYYGKBN	32.87	29.8653	10.386
TYGYYHAN	32.62	29.8653	9.80633
GTYRYABM	18.42	16.2481	9.26218
GTCRBTRK	10.12	8.48244	8.97999
TMGCVYSK	18.25	16.2481	8.1822

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]