Task

Task #2569 - 225.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	2 minutes (173sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
AGGGATGA	10.3	0.368585	1082.49
CATCCCTN	11.4	1.46624	608.345
GGGATGAN	11.09	1.46624	579.504
ATCCCTNN	15.46	5.73774	267.619
GGATGANN	14.64	5.73774	229.553
TCCCTNNN	29.24	21.057	82.6718
GATGANNN	28.44	21.057	67.6531
CCCTBNBD	36.49	32.9098	13.6443
ADGMGDKB	35.78	32.9098	10.069
CKSGKTKS	13.0	11.1475	9.1127
GRSTKYYH	32.45	29.8653	8.88709
GVHGBTCN	35.53	32.9098	8.74487
RRGYAAHS	18.34	16.2481	8.74352
YTBTRRKR	32.39	29.8653	8.57631
WGRSTDYY	32.38	29.8653	8.52521
AYNACVAD	25.66	23.3573	8.33224
GBYRADRG	25.6	23.3573	8.01151

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]