Task

Task #2491 - 155.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	6 minutes (410sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
GATRARGC	60.44	1.46624	8195.99
CYTYATCN	61.77	5.73774	4878.6
ATRARGCN	61.59	5.73774	4853.0
YTYATCNN	68.15	21.057	2222.6
TRARGCNN	67.82	21.057	2192.86
TYATCBNN	61.52	29.8653	929.59
RARGCVDD	50.86	32.9098	299.12
TYATCANN	23.4	11.1475	261.747
RARGCNCN	30.68	21.057	112.209
DYHHGATR	42.02	32.9098	80.5712
RARGCTDN	23.53	16.2481	77.9199
ARGCGDNN	38.17	29.8653	70.3891
ARGCYVVH	40.79	32.9098	61.0717
CNHNGATR	37.49	29.8653	59.8463
GHYGCYTY	12.92	8.48244	50.0561
ARGCANVN	36.64	29.8653	47.8736
DRDDGATR	39.12	32.9098	38.9562
ARGCHNTB	28.46	23.3573	32.2147
DYNGGATR	20.2	16.2481	25.4773
ATCTHVVN	37.52	32.9098	22.5376
ARGCYNVG	19.62	16.2481	19.2276
ATCRKDVB	36.78	32.9098	16.5431
YATCDCRN	19.09	16.2481	14.3261
DRCNGATR	19.05	16.2481	13.988
GYGGCYTB	5.85	4.3348	12.6485
ATCMMNDS	33.01	29.8653	12.1307
RGCGDRBY	26.22	23.3573	11.7193
AKCVHRDA	35.76	32.9098	9.95872
ARGCGCVN	10.19	8.48244	9.5845
ATGNNTTA	7.13	5.73774	9.06394
ATCYGBNV	25.72	23.3573	8.66117

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]