Task

Task #2596 - 34.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	5 years ago	5 years ago	5 years ago	5 minutes (306sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
MTASNKTR	44.38	21.057	593.021
AMVSTAKN	46.01	29.8653	251.905
TASNKTRH	43.23	29.8653	174.864
AMTSTAKN	17.65	11.1475	82.4106
TASNKTGG	9.14	5.73774	41.6155
MMSTAKMD	34.92	29.8653	27.7952
AGHKTRDH	37.96	32.9098	25.884
MKGTAKBN	34.03	29.8653	19.6174
TAGNDTAG	6.17	4.3348	17.4442
ACNTTRDN	33.5	29.8653	15.4742
GTAKVRVV	36.54	32.9098	13.9953
HGTATVDV	29.15	25.8654	13.961
MNCTATKN	24.07	21.057	13.5045
ASWDTRCV	26.22	23.3573	11.7193
HRNCTACN	32.83	29.8653	11.0207
GTAKBYBB	36.04	32.9098	10.6924
TACNWTMG	7.22	5.73774	10.0002
CTATNNMV	32.55	29.8653	9.42089
TAKSAVVH	35.63	32.9098	9.26032
VMGTADKB	35.59	32.9098	9.05187
DNVATAGV	35.56	32.9098	8.89752
AGGKTRNN	23.35	21.057	8.72156
GNRCWASV	32.33	29.8653	8.27267
VGCTAGAN	5.49	4.3348	8.22033
TAKSYBCN	32.3	29.8653	8.12353

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]