Task

Task #2447 - 115.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	5 years ago	5 years ago	5 years ago	a minute (96sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
GTGANBTG	49.6	4.3348	386.325
TGANNTGN	68.2	21.057	224.021
ANNTCACN	68.0	21.057	222.215
GTGANATG	14.7	1.46624	95.1834
GANBTGDD	55.5	32.9098	48.0036
HBGTGAVN	54.1	32.9098	42.7188
TCACNVVH	53.2	32.9098	39.12
BTCACVVN	52.7	32.9098	37.5608
GNGTGANN	32.3	21.057	16.4118
TCACNNNG	32.0	21.057	15.6621
GANNTGCN	31.5	21.057	14.4525
HNGTGATN	25.0	16.2481	12.3701
DTCACTBD	16.5	9.49105	11.8677
MAGTGAVN	14.7	8.48244	10.4878
GANNTGDC	23.9	16.2481	9.91927
AVCTGVDN	42.2	32.9098	9.7487
ATCACVVN	18.7	12.451	8.37494
TKSKVGTG	13.8	8.48244	8.19495

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]