Task

Task #2478 - 143.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	7 minutes (473sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TTYKAGTC	60.48	1.46624	8204.04
TYKAGTCN	62.04	5.73774	4917.11
ACTMRAAN	61.79	5.73774	4881.45
YKAGTCNN	68.34	21.057	2239.81
CTMRAANN	67.55	21.057	2168.7
KAGTCNHN	61.63	29.8653	936.055
AGTCHHNB	50.58	32.9098	290.109
TMRAABDV	49.9	32.9098	268.791
KAGTCNGN	22.89	11.1475	242.579
AGTCNNNA	31.75	21.057	136.906
ANNTTYKA	31.59	21.057	133.066
AGTCGNNB	24.82	16.2481	106.185
TMRAANCV	24.71	16.2481	103.658
AGTCHGNB	18.73	12.451	71.4649
TMRAAADV	18.5	12.451	66.7164
AAAABNDV	39.85	32.9098	47.4183
GTCMYDBV	37.85	32.9098	24.8309
DSHDTTCK	37.44	32.9098	21.8405
GTCHABVN	37.25	32.9098	19.4768
MAAAABNN	33.91	29.8653	18.6316
GTCGNDDV	37.03	32.9098	17.6791
MAAABNCN	33.71	29.8653	17.0506
AAABHGVN	36.71	32.9098	16.0289
GTCKYNCN	24.11	21.057	13.8066
MGAANCND	33.18	29.8653	13.2374
ATTNNGAG	7.41	5.73774	12.1484
AYNVTTTK	18.79	16.2481	11.9006
GTTNNGAG	7.38	5.73774	11.7939
AAABGNVV	35.94	32.9098	10.9785
GTCHBNAD	35.87	32.9098	10.5746
MWHBTTCK	25.85	23.3573	9.4019
AAAYMHBB	35.64	32.9098	9.31291
TCTNNTAG	7.14	5.73774	9.16536
GTCHRHTV	20.31	18.0847	9.04464
CAAABHDV	28.35	25.8654	8.90595

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]