Task

Task #2622 - 58.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	5 years ago	5 years ago	5 years ago	6 minutes (366sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TYTANWMS	44.21	21.057	584.955
KWVTARAN	46.19	29.8653	257.36
YTABWCSN	39.04	29.8653	84.6437
WRTARANV	38.32	29.8653	72.3283
TARAMVHH	39.97	32.9098	49.0039
YTANWASB	36.66	29.8653	48.1398
KATTARAN	9.14	5.73774	41.214
AYTARANN	26.28	21.057	35.1791
TARANBGN	35.34	29.8653	32.1811
MTAAABNN	34.73	29.8653	25.9217
RTAGANNV	34.6	29.8653	24.6796
AHTYTAYW	11.29	8.48244	22.0499
TARAVNHG	27.09	23.3573	18.3741
TARAKVHH	36.99	32.9098	18.1407
KTTTAVAK	6.21	4.3348	18.0984
TAYWMCNV	33.82	29.8653	17.9105
TSTTNTAR	7.69	5.73774	15.729
YTAGAVWN	19.03	16.2481	13.8206
TARTMCNN	24.08	21.057	13.5797
TAYWMGBN	33.21	29.8653	13.4386
TYTARARW	7.45	5.73774	12.63
AHACMDKH	36.06	32.9098	11.6922
AGWVSBDT	36.18	32.9098	11.5707
YTAATCSB	5.73	4.3348	11.056
KTAAABNG	10.24	8.48244	10.0305
TARAVTHA	7.94	6.4315	9.50623
ADAMKRKS	32.54	29.8653	9.36662
RAWACDRK	18.4	16.2481	9.13078
DAAKHGKH	35.39	32.9098	8.05508
AGAWVVCN	25.6	23.3573	8.01151

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]