Task

Task #2662 - 94.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	4 minutes (256sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
ACRTWCNG	33.93	5.73774	1601.2
CRTWCNGN	44.54	21.057	600.659
NACRTWCN	44.08	21.057	578.821
GWAYGTNN	43.82	21.057	566.643
RTWCBGVD	41.69	32.9098	75.074
WAYGTVDD	41.14	32.9098	66.3445
RTWCAGNN	26.98	21.057	45.1425
TWCDGVKV	38.52	32.9098	32.2484
GNCVGWAY	20.53	16.2481	29.4389
RTWCYGTD	11.37	8.48244	23.1668
TWCVGSMN	34.32	29.8653	22.1147
WATGTNCN	14.27	11.1475	21.7859
ATGTDNDV	37.31	32.9098	20.733
WAYGTNDC	19.66	16.2481	19.6291
WAYGTTDD	15.32	12.451	17.3848
AYGTNKDT	19.01	16.2481	13.6544
TWCNGWCD	18.75	16.2481	11.5965
AYKGYKVW	32.66	29.8653	10.0309
TWCCGNKB	18.46	16.2481	9.52845
AMTSMACW	7.12	5.73774	8.96317
KKBYYACR	32.39	29.8653	8.57631

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]