Task

Task #2637 - 71.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	6 minutes (365sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
CGATCNGN	62.14	5.73774	4931.41
CNGATCGN	61.63	5.73774	4858.68
GATCNGNN	66.91	21.057	2112.0
NGATCGNN	63.5	21.057	1823.31
GATCGHNN	52.35	16.2481	1494.98
ATCGGNNN	40.08	21.057	404.739
ATCHGHVN	49.66	32.9098	261.458
ATCGHVHN	49.36	32.9098	252.434
ATCHGGNN	24.84	16.2481	106.647
ATCGHNGN	24.06	16.2481	89.309
TCGGDDNB	40.12	32.9098	51.5929
ATCGYTHN	12.94	8.48244	50.4658
ATCHGYTN	12.67	8.48244	45.0656
TCGBCHVN	38.72	32.9098	34.4112
TCGBDCHN	37.7	32.9098	24.1494
TCGNDDVA	37.3	32.9098	20.6491
TCAGDDNH	37.27	32.9098	20.3986
TCYGDSVB	37.1	32.9098	19.0103
TCHGCNBB	36.6	32.9098	15.2393
TCGHKRBG	14.67	12.451	11.2984
TCGNNGGA	7.17	5.73774	9.47354
TCYGWWDN	32.41	29.8653	8.67911
ATCMRATD	5.53	4.3348	8.66001
ACNNNCGA	23.32	21.057	8.54938
TCGHADMS	14.28	12.451	8.34664
GATNNCAC	7.04	5.73774	8.18075

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]