Task

Task #2556 - 213.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	2 minutes (170sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TTCCGCTG	10.27	0.368585	1078.02
TCCGCTGN	11.34	1.46624	602.73
AGCGGAAN	11.07	1.46624	577.657
CCGCTGNN	15.56	5.73774	272.415
GCGGAANN	14.81	5.73774	237.256
CGCTGNNN	29.01	21.057	77.8956
CGGAANNN	28.47	21.057	68.6555
GCTGNMVN	33.86	29.8653	18.2291
GGAANVDB	36.75	32.9098	15.52
WGSCGCWH	10.17	8.48244	9.40941
GCTGDKDH	20.36	18.0847	9.36019
KKKDSSAG	32.43	29.8653	8.7827
AWVGCBYV	35.53	32.9098	8.74487
KCSCAVSM	18.28	16.2481	8.36669
AGBWCBCY	14.25	12.451	8.14178
GWMYSCHY	32.28	29.8653	8.02509

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]