Task

Task #2554 - 211.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	5 years ago	5 years ago	5 years ago	a minute (89sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TTCCGCTG	60.0	0.368585	1170.02
AGCGGAAN	60.2	1.46624	816.153
TCCGCTGN	60.0	1.46624	812.143
GCGGAANN	61.4	5.73774	483.967
CCGCTGNN	60.7	5.73774	474.092
CGGAANNN	68.4	21.057	225.892
CGCTGNNN	65.7	21.057	202.007
GCTGDDBN	51.9	32.9098	34.7666
GGAAVHND	51.4	32.9098	33.0767
GCTGHCNN	27.1	16.2481	17.8196
GGAANGNN	32.7	21.057	17.4392
GCTGNDAN	24.7	16.2481	11.6736
GGAATHNN	24.6	16.2481	11.4461
TTCNNCGG	10.9	5.73774	9.97584
GAAMVRBD	42.0	32.9098	9.40655
WNNACCAG	17.3	11.1475	8.72451
GMRYKTCS	17.3	11.1475	8.72451

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]