Task

Task #2451 - 119.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	7 minutes (477sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
GTGANVTG	48.09	4.3348	3649.67
TGANNTGN	68.36	21.057	2241.63
ANNTCACN	68.2	21.057	2227.12
GTGANTTG	15.53	1.46624	1028.77
DNTCACHB	51.2	32.9098	310.246
DVHGTGAN	50.88	32.9098	299.769
GAHNTGBB	50.22	32.9098	278.434
TCACNVHH	49.7	32.9098	262.674
NTCACCNN	33.15	21.057	172.678
NCGTGANN	32.39	21.057	152.777
TCACNNNG	31.63	21.057	134.021
CNTCACHN	25.09	16.2481	112.505
NTCACDAN	24.8	16.2481	105.723
GANHTGAN	24.78	16.2481	105.263
GAGNTGBN	24.4	16.2481	96.6907
TCACNNGH	23.77	16.2481	83.2299
TDGTGANH	18.9	12.451	75.0717
TVCANDTC	18.37	12.451	64.0998
CVHGTGAN	18.17	12.451	60.1699
TCACNTWH	13.23	8.48244	56.5789
AHSTGBDK	38.24	32.9098	29.3437
WRDHHGTG	37.85	32.9098	25.5383
CACNBARN	33.95	29.8653	18.9571
AVWTGRNR	33.84	29.8653	18.0694
CACDANRD	26.54	23.3573	13.9714
ADNTGYCN	33.27	29.8653	13.8463
ABWTGNKY	33.22	29.8653	13.5061
CACKNHYS	32.98	29.8653	11.9413
CACCHSBV	20.55	18.0847	10.6202
AGNNNTGA	23.58	21.057	10.114
ANCTGAHV	14.46	12.451	9.64268
ANSTGSDM	32.43	29.8653	8.7827
CACNBYAD	25.7	23.3573	8.55062
ABWTGYWR	18.27	16.2481	8.3049
AGNNNGTG	23.23	21.057	8.04596

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]