Task

Task #2583 - 238.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	4 minutes (246sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TGGAAAGA	30.27	0.368585	4716.52
CTTTCCAN	30.75	1.46624	3005.42
GGAAAGAN	30.69	1.46624	2996.58
GAAAGANN	33.53	5.73774	1564.36
TTTCCANN	33.46	5.73774	1557.88
AAAGANNN	44.32	21.057	590.168
TTCCANNN	44.23	21.057	586.079
AAGADHNB	41.79	32.9098	76.7193
TCCAVBVN	41.59	32.9098	73.4466
TCCANNTN	26.45	21.057	37.9502
AAGACNNN	26.31	21.057	36.1547
TCCATNVN	20.09	16.2481	24.2217
AAGADHNA	15.48	12.451	19.1018
TCCAVAVN	15.4	12.451	18.2326
AAGADGNN	19.23	16.2481	14.8184
AGARYNKS	24.04	21.057	13.2805
CCAVRRBD	35.82	32.9098	10.2918
TCTNNTTC	7.2	5.73774	9.78759
AGAWRHVB	35.62	32.9098	9.20793
CCANRYTB	18.26	16.2481	8.24341
WBACRKSG	18.24	16.2481	8.12129
CCAHYBAD	20.14	18.0847	8.022

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]