Task

Task #2580 - 235.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	a minute (84sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TGGAAAGA	60.2	0.368585	1175.24
GGAAAGAN	60.3	1.46624	818.161
CTTTCCAN	60.3	1.46624	818.161
TTTCCANN	61.8	5.73774	489.649
GAAAGANN	61.0	5.73774	478.313
AAAGANNN	67.8	21.057	220.416
TTCCANNN	66.6	21.057	209.854
AAGAVNVH	52.2	32.9098	35.8013
TCCAVVND	51.7	32.9098	33.8211
TCCATBNN	26.0	16.2481	14.4976
AAGANNNG	30.9	21.057	13.0673
TTTCNTTC	5.0	1.46624	12.808
AAGAHBTH	16.1	9.49105	10.7881
TCCAVNNC	24.3	16.2481	10.7776
AGAAVVSV	25.9	18.0847	9.67368
CCAMDWHD	42.3	32.9098	9.45091

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]