Task

Task #2557 - 214.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	4 minutes (266sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TTCCGCTG	30.31	0.368585	4724.8
TCCGCTGN	31.0	1.46624	3042.36
AGCGGAAN	30.85	1.46624	3020.18
CCGCTGNN	33.71	5.73774	1580.93
GCGGAANN	33.47	5.73774	1558.8
CGGAANNN	44.44	21.057	596.056
CGCTGNNN	44.28	21.057	588.27
GGAAVDNB	42.47	32.9098	88.3802
GCTGVNHH	42.3	32.9098	85.3878
GCTGTNNN	26.48	21.057	37.7569
GGAATNNN	26.41	21.057	37.4328
GCTGVNNG	20.36	16.2481	27.3616
GGAAVCNN	19.96	16.2481	22.7802
TNHBTTCC	15.02	12.451	14.3969
GCTGRNGH	10.6	8.48244	13.5875
TTCNNCGG	7.48	5.73774	12.9977
GTTNNCGC	7.47	5.73774	12.8745
ATTNNCGC	7.4	5.73774	12.0296
AGCNNCGG	7.4	5.73774	12.0296
RDDKDCAG	36.11	32.9098	11.9977
WNDRKTTC	32.84	29.8653	11.0807
TTTNNCGC	7.2	5.73774	9.78759
AANNNCAG	23.41	21.057	9.07247
GAAARVDB	20.29	18.0847	8.9203
CTGNBGNR	32.54	29.8653	8.44698
GRABKGKN	32.29	29.8653	8.07421

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]