Task

Task #2517 - 179.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	5 years ago	5 years ago	5 years ago	6 minutes (400sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
AAATTNAA	60.57	1.46624	8222.15
TNAATTTN	61.78	5.73774	4880.02
AATTNAAN	61.59	5.73774	4853.0
NAATTTNN	65.87	21.057	2021.63
ATTNAANN	63.49	21.057	1822.42
AATTTNNN	62.89	21.057	1773.9
TTRAANVN	46.49	29.8653	266.87
ATTTDBBN	49.35	32.9098	252.136
TTYAABNN	45.1	29.8653	225.511
ATTTCNNN	31.04	21.057	120.26
TTRAAVTV	11.04	6.4315	65.8234
ATTTKANV	13.62	8.48244	65.3003
ATTTDBAN	18.01	12.451	57.11
TTYAAANV	12.67	8.48244	45.0656
TTTSKHHV	38.72	32.9098	34.4112
TTTWSBDD	38.32	32.9098	30.1589
TTTSMYNB	34.26	29.8653	21.5847
TRAAVSHV	37.41	32.9098	21.5821
TANNNAAA	24.66	21.057	18.3433
TDAABANB	36.99	32.9098	18.1407
TCAASNNH	33.7	29.8653	16.9736
TTTWTSNB	19.34	16.2481	16.5407
TTTSNGNB	33.29	29.8653	13.9837
TTWWSBCN	32.94	29.8653	11.6914
AASDTYAA	5.75	4.3348	11.3134
TVAAWBGB	20.57	18.0847	10.7585
TRAASTND	18.51	16.2481	9.86778
AVTMAAAW	5.58	4.3348	9.2283
WAAWTSWB	18.39	16.2481	9.06551
TTTWSNDC	18.37	16.2481	8.93584
TKWATBRA	10.09	8.48244	8.72807

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]