Task

Task #2529 - 19.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	a minute (94sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
RYRACYNG	68.3	21.057	224.927
YRACYDGN	61.0	29.8653	91.2509
RACYHGHB	52.2	32.9098	35.5442
RGTYRCNV	47.4	29.8653	30.9653
HRGTYGYN	47.4	29.8653	30.9653
BRTRACYN	46.8	29.8653	29.043
YRACYCGN	23.2	11.1475	26.7516
RGTYRTHN	44.4	29.8653	21.9823
GTYRCVDD	45.3	32.9098	15.9569
ACYMGVVV	45.2	32.9098	15.343
RACYVGGV	21.3	12.451	14.7584
ACYKGBBY	33.3	23.3573	12.2088
TDCNRGTY	24.2	16.2481	10.1611
GTCRTNHN	39.0	29.8653	9.35228
TTGCSNGM	10.7	5.73774	9.07542
ASGYRACB	14.1	8.48244	8.57543
GTYRCTVN	23.1	16.2481	8.31751

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]