Task

Task #2504 - 167.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	7 minutes (464sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TAGANTTG	60.54	1.46624	8216.11
AANTCTAN	61.8	5.73774	4882.87
AGANTTGN	61.73	5.73774	4872.91
ANTCTANN	67.32	21.057	2148.29
GANTTGNN	67.24	21.057	2141.13
DTCTADND	49.93	32.9098	269.714
TCTAHVHN	49.63	32.9098	260.549
ABTTGNHH	48.6	32.9098	229.954
NTCTACNN	31.99	21.057	142.762
TCTANTNN	31.78	21.057	137.631
ANTTGNGN	31.32	21.057	126.703
TCTANVGN	24.3	16.2481	94.4912
ANTTGNHG	24.11	16.2481	90.3774
GVHTAGAN	19.33	12.451	84.5589
AATTGNHH	18.14	12.451	59.5904
CTCTADBD	14.01	9.49105	47.6095
TCTAGSHN	12.59	8.48244	43.5202
RTTGVDMD	37.79	32.9098	24.9777
CTAHYBSD	37.59	32.9098	23.1573
TTGNGVDD	37.57	32.9098	22.2502
YMBBCAAD	37.33	32.9098	20.9013
TTGRHDMB	37.31	32.9098	19.9825
CTAMRVVV	36.86	32.9098	17.142
YTTGNKMV	33.44	29.8653	15.0396
TTGYYRAN	13.42	11.1475	12.6426
CTSTAWAD	5.84	4.3348	12.5115
TTGVWBKH	36.08	32.9098	11.8138
RANVCAAN	32.78	29.8653	10.7237
GNVRNTAG	32.74	29.8653	10.4896
GTWWAGAN	7.25	5.73774	10.324
CTANBHTK	25.87	23.3573	9.51926
TTGNYHCA	10.16	8.48244	9.32257
GYNTCAAY	7.14	5.73774	9.16536
AATNNAAA	7.11	5.73774	8.86306
WKAYNTAG	12.85	11.1475	8.01518
YMANCAAD	18.22	16.2481	8.00033

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]